Hello @isams123,
multi-zone ovens’ a fairly common where a special or unique process is beneficial. Product like pizza or flatbread that bake in a relatively short time may need high heat at first to get proper expansion, but then lower heat after, and a single chamber oven cannot cool down that fast.
First, I think you need to get your heat transfer up. You mentioned you are baking on a stone. First try just making 1 change. Bake on the stone instead of the pan. Then try the same, only higher temperature. As hot as you can set the oven. A home oven will never be as hot as a pizza oven, but you can at least troubleshoot your product development first.